Data underlying the study’s findings will be a requirement of publication, per the PLOS data policy. Under this Call for Papers, authors are responsible for providing, where relevant and upon submission, the source code needed to replicate their findings, in a repository (such as GitHub or Bitbucket) or a cloud computing service (such as Code Ocean). Protection of authors’ intellectual property will not be cause for exception. Authors should explain in the manuscript’s Data Availability Statement how readers can access the shared code. For any referenced third party code that cannot be shared, authors are responsible for including, in the Data Availability Statement, contact information and steps by which an interested reader can acquire the code.
Where relevant, authors are encouraged to provide executable documents, such as a Jupyter Notebook or an RMarkdown, to increase reproducibility. The Software Sustainability Institute provides guidance on choosing a repository and sharing code, as do these PLOS articles on Best Practices and Good Enough Practices in scientific computing.
Authors reporting new protocols are encouraged to register these on the protocols.io platform. For more information on our partnership with protocols.io, please see this blogpost.